All of the waters in the South Independent Streams Basin not specifically listed below shall be classified as Fish and Wildlife. Basin waters carrying other classifications are:
| Waters | From | To | Classification |
Bayou Pierre
| Headwaters | Mississippi River | Recreation |
Clear Springs Lake
| Franklin County |  | Recreation |
East Fork Amite River
| MS Hwy 584 | MS/LA State Line | Recreation |
Homochitto River
| U.S. Hwy 84 | U.S. Hwy 98 | Recreation |
Little Bayou Pierre
| Headwaters | Bayou Pierre | Recreation |
Percy Quinn State Park Lake
| Pike County | | Recreation |
Unnamed Drainage Ditch
(Westside Heights) | Woodville | Bayou Sara | Ephemeral |
West Fork Amite River
| MS Hwy 24 | MS/LA State Line | Recreation |
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